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GitHub Repository Setup Instructions

Repository Status

✅ Git repository initialized ✅ All files committed (130 files, 26,527+ lines) ✅ Remote configured: https://github.com/Sapana-Micro-Software/solve-genomics.git ✅ Branch set to main

Next Steps

1. Create the Repository on GitHub

  1. Go to https://github.com/organizations/Sapana-Micro-Software/repositories/new

  2. Repository settings:

    • Repository name: solve-genomics
    • Description: "Comprehensive DNA Sequence Alignment and Pattern Matching Algorithms"
    • Visibility: Public ✅
    • DO NOT initialize with README, .gitignore, or license (we already have these)

  3. Click "Create repository"

2. Push to GitHub

Once the repository is created, run:

cd /Users/shyamalchandra/Solve-Genomics
git push -u origin main

3. Enable GitHub Pages

After pushing:

  1. Go to repository Settings → Pages
  2. Under "Source", select "GitHub Actions"
  3. The site will automatically deploy using the workflow in .github/workflows/pages.yml

4. Verify Deployment

  • Check Actions tab for build status
  • Visit https://sapana-micro-software.github.io/solve-genomics/ once deployed

Current Commit

Commit: 98a4278
Message: Initial commit: Comprehensive DNA sequence alignment and pattern matching algorithms
Files: 130 files changed, 26,527 insertions(+)

Repository Contents

  • ✅ 25+ algorithm implementations (C++)
  • ✅ Comprehensive test suite
  • ✅ LaTeX paper and presentation (with PREPRINT watermark)
  • ✅ Benchmark results PDF
  • ✅ GitHub Pages setup (Jekyll + TypeScript + TailwindCSS)
  • ✅ SVG visualizations
  • ✅ Documentation and README files

Quick Push Command

git push -u origin main