Inference inside callback #19752

quentinblampey · 2024-04-10T07:45:44Z

quentinblampey
Apr 10, 2024

Hello,

I have a weird issue when running inference with a callback. I guess I'm not using pytorch lightning the intended way.

After each epoch, inside a callback, I run trainer.predict on a small dataset to plot some figures that I save with weight & biases. I thought it was pretty standard to do so, but I got the error below.

I wrote this dummy minimal reproducible example:

import lightning as L
from lightning.pytorch.callbacks import Callback

import torch
from torch.utils.data import DataLoader
from torch import nn, optim

class Model(L.LightningModule):
    def __init__(self):
        super().__init__()
        self.f = nn.Linear(10, 1)
        
    def training_step(self, batch, *args):
        out = self(batch)
        return out.mean()
    
    def forward(self, x):
        return self.f(x)[:, 0]

    def train_dataloader(self):
        return DataLoader(torch.randn((100, 10)))
    
    def predict_dataloader(self):
        return DataLoader(torch.randn((100, 10)))
    
    def predict_step(self, batch):
        return self(batch)
    
    def configure_optimizers(self):
        optimizer = optim.Adam(self.parameters(), lr=1e-3)
        return optimizer
    
class PlotCallback(Callback):
    def on_train_epoch_end(self, trainer: L.Trainer, model: Model) -> None:
        loader = model.predict_dataloader()
        trainer.predict(model, loader)
        
        ... # save figure to wandb

model = Model()
callback = PlotCallback()
trainer = L.Trainer(max_epochs=2, callbacks=callback, accelerator="cpu")

trainer.fit(model)

Error log

---------------------------------------------------------------------------
AssertionError                            Traceback (most recent call last)
Cell In[3], [line 5]
      [2] callback = PlotCallback()
      [3] trainer = L.Trainer(max_epochs=2, callbacks=callback, accelerator="cpu")
----> [5] trainer.fit(model)

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:544](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:544), in Trainer.fit(self, model, train_dataloaders, val_dataloaders, datamodule, ckpt_path)
    [542](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:542) self.state.status = TrainerStatus.RUNNING
    [543](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:543) self.training = True
--> [544](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:544) call._call_and_handle_interrupt(
    [545](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:545)     self, self._fit_impl, model, train_dataloaders, val_dataloaders, datamodule, ckpt_path
    [546](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:546) )

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/call.py:44](XXX/python3.9/site-packages/lightning/pytorch/trainer/call.py:44), in _call_and_handle_interrupt(trainer, trainer_fn, *args, **kwargs)
     [42](XXX/python3.9/site-packages/lightning/pytorch/trainer/call.py:42)     if trainer.strategy.launcher is not None:
     [43](XXX/python3.9/site-packages/lightning/pytorch/trainer/call.py:43)         return trainer.strategy.launcher.launch(trainer_fn, *args, trainer=trainer, **kwargs)
---> [44](XXX/python3.9/site-packages/lightning/pytorch/trainer/call.py:44)     return trainer_fn(*args, **kwargs)
     [46](XXX/python3.9/site-packages/lightning/pytorch/trainer/call.py:46) except _TunerExitException:
     [47](XXX/python3.9/site-packages/lightning/pytorch/trainer/call.py:47)     _call_teardown_hook(trainer)

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:580](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:580), in Trainer._fit_impl(self, model, train_dataloaders, val_dataloaders, datamodule, ckpt_path)
    [573](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:573) assert self.state.fn is not None
    [574](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:574) ckpt_path = self._checkpoint_connector._select_ckpt_path(
    [575](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:575)     self.state.fn,
    [576](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:576)     ckpt_path,
    [577](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:577)     model_provided=True,
    [578](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:578)     model_connected=self.lightning_module is not None,
    [579](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:579) )
--> [580](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:580) self._run(model, ckpt_path=ckpt_path)
    [582](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:582) assert self.state.stopped
    [583](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:583) self.training = False

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:987](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:987), in Trainer._run(self, model, ckpt_path)
    [982](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:982) self._signal_connector.register_signal_handlers()
    [984](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:984) # ----------------------------
    [985](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:985) # RUN THE TRAINER
    [986](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:986) # ----------------------------
--> [987](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:987) results = self._run_stage()
    [989](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:989) # ----------------------------
    [990](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:990) # POST-Training CLEAN UP
    [991](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:991) # ----------------------------
    [992](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:992) log.debug(f"{self.__class__.__name__}: trainer tearing down")

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1033](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1033), in Trainer._run_stage(self)
   [1031](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1031)         self._run_sanity_check()
   [1032](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1032)     with torch.autograd.set_detect_anomaly(self._detect_anomaly):
-> [1033](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1033)         self.fit_loop.run()
   [1034](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1034)     return None
   [1035](XXX/python3.9/site-packages/lightning/pytorch/trainer/trainer.py:1035) raise RuntimeError(f"Unexpected state {self.state}")

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:206](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:206), in _FitLoop.run(self)
    [204](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:204)     self.on_advance_start()
    [205](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:205)     self.advance()
--> [206](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:206)     self.on_advance_end()
    [207](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:207)     self._restarting = False
    [208](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:208) except StopIteration:

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:380](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:380), in _FitLoop.on_advance_end(self)
    [377](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:377) call._call_lightning_module_hook(trainer, "on_train_epoch_end")
    [378](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:378) call._call_callback_hooks(trainer, "on_train_epoch_end", monitoring_callbacks=True)
--> [380](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:380) trainer._logger_connector.on_epoch_end()
    [382](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:382) if self.epoch_loop._num_ready_batches_reached():
    [383](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:383)     # if we are restarting and the above condition holds, it's because we are reloading an epoch-end checkpoint.
    [384](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:384)     # since metric-based schedulers require access to metrics and those are not currently saved in the
    [385](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:385)     # checkpoint, the plateau schedulers shouldn't be updated
    [386](XXX/python3.9/site-packages/lightning/pytorch/loops/fit_loop.py:386)     self.epoch_loop.update_lr_schedulers("epoch", update_plateau_schedulers=not self.restarting)

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:195](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:195), in _LoggerConnector.on_epoch_end(self)
    [193](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:193) def on_epoch_end(self) -> None:
    [194](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:194)     assert self._first_loop_iter is None
--> [195](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:195)     metrics = self.metrics
    [196](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:196)     self._progress_bar_metrics.update(metrics["pbar"])
    [197](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:197)     self._callback_metrics.update(metrics["callback"])

File [~/Library/Caches/pypoetry/virtualenvs/novae-ezkWKrh6-py3.9/lib/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:233](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:233), in _LoggerConnector.metrics(self)
    [231](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:231) """This function returns either batch or epoch metrics."""
    [232](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:232) on_step = self._first_loop_iter is not None
--> [233](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:233) assert self.trainer._results is not None
    [234](XXX/python3.9/site-packages/lightning/pytorch/trainer/connectors/logger_connector/logger_connector.py:234) return self.trainer._results.metrics(on_step)

AssertionError:

Versions:

Python 3.9
Lightning 2.2.1
Torch 2.2.1

quentinblampey · 2024-04-22T14:22:13Z

quentinblampey
Apr 22, 2024
Author

Using pl_module.transfer_batch_to_device solved this:

class PlotCallback(Callback):
    def on_train_epoch_end(self, trainer: L.Trainer, model: Model) -> None:
        loader = model.predict_dataloader()
        for batch in loader:
            batch = model.transfer_batch_to_device(batch, model.device, 0)
            model.predict_step(batch)
        
        ... # save figure to wandb

0 replies

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

Inference inside callback #19752

Uh oh!

{{title}}

Uh oh!

Uh oh!

{{editor}}'s edit

{{editor}}'s edit

Uh oh!

Replies: 1 comment

Uh oh!

{{title}}

Uh oh!

Uh oh!

{{editor}}'s edit

{{editor}}'s edit

Uh oh!

Select a reply

Uh oh!

Inference inside callback #19752

Uh oh!

Uh oh!

quentinblampey Apr 10, 2024

Replies: 1 comment

Uh oh!

Uh oh!

quentinblampey Apr 22, 2024 Author

quentinblampey
Apr 10, 2024

quentinblampey
Apr 22, 2024
Author