README.md

Documentation

The Sarek pipeline comes with the following documentation:

1. Installation documentation
2. Installation documentation specific for UPPMAX rackham
3. Installation documentation specific for UPPMAX bianca
4. Tests documentation
5. Reference files documentation
6. Configuration and profiles documentation
7. Intervals documentation
8. Running the pipeline
9. Examples
10. TSV file documentation
11. Processes documentation
12. Documentation about containers
13. More information about ASCAT
14. Output documentation structure